Package: NicheBarcoding 1.8

Cai-qing YANG

NicheBarcoding: Niche-model-Based Species Identification

Species Identification using DNA Barcodes Integrated with Environmental Niche Models.

Authors:Cai-qing YANG [aut, cre], Ying WANG [aut], Xin-hai LI [aut], Jing LI [aut], Bing YANG [aut], Michael christopher ORR [aut], Ai-bing ZHANG [aut]

NicheBarcoding_1.8.tar.gz
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NicheBarcoding_1.8.tgz(r-4.4-any)NicheBarcoding_1.8.tgz(r-4.3-any)
NicheBarcoding_1.8.tar.gz(r-4.5-noble)NicheBarcoding_1.8.tar.gz(r-4.4-noble)
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NicheBarcoding.pdf |NicheBarcoding.html✨
NicheBarcoding/json (API)

# Install 'NicheBarcoding' in R:
install.packages('NicheBarcoding', repos = c('https://yangcq-ivy.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/yangcq-ivy/nichebarcoding/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT
Datasets:
  • LappetMoths - LappetMoths data set, a list of 8 data frames.
  • bak.vir - Bak.vir data set, a class of matrix.
  • en.vir - En.vir data set, a class of RasterBrick.

On CRAN:

4.18 score 7 scripts 170 downloads 9 exports 25 dependencies

Last updated 3 months agofrom:40c0d6c43f. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 06 2024
R-4.5-winERRORNov 06 2024
R-4.5-linuxERRORNov 06 2024
R-4.4-winERRORNov 06 2024
R-4.4-macERRORNov 06 2024
R-4.3-winERRORNov 06 2024
R-4.3-macERRORNov 06 2024

Exports:extractSpeInfomonophyly.propNBSINBSI2niche.Model.Buildniche.PCApseudo.absent.pointspseudo.present.pointsspe.mantel.test

Dependencies:apeclassclusterdigestdismoe1071latticemapsMASSMatrixmgcvnlmepegaspermuteplyrpROCproxyrandomForestrasterRcpprJavaspspiderterravegan

Niche-model-Based Species Identification

Rendered fromhow-to-do-stuff-NBSI.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2024-08-08
Started: 2021-12-17

NicheBaroding species identification

Rendered fromhow_it_works.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2024-08-08
Started: 2021-12-17

NicheBaroding Species Identification

Rendered fromNBSI.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2024-08-08
Started: 2021-12-17